PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9178_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 226aa    MW: 25089.9 Da    PI: 10.7183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9178_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-1265111354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+ +ErrRR riN  fe Lr+ lP++      K +Ka++L ++v+Y k+L
  RrC9178_p3  65 KKHSDAERRRRLRINCQFEALRTTLPNL-----IKQDKASVLIETVRYFKEL 111
                 68*************************9.....6****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1253118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.62762111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.24E-965115No hitNo description
PfamPF000103.4E-1065111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1266115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1068117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.1E-5138203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVLLQHLEQG MRPLSQRYNA TAYSTTMGRN FFTTGPASSN LFSSRGYSAN AKPKSKTESK  60
EVAAKKHSDA ERRRRLRINC QFEALRTTLP NLIKQDKASV LIETVRYFKE LKKLVNEIPT  120
TPSLEDSLRL GQCKNRDFAR VVFSCSDREG LMSEVAESMK AANAKAVRAE MMTVGGRTKC  180
VLFVQGVSGN EGLVKLKKAL KPVVNRKPEA KDNSSSGGSL MLPQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013679647.11e-149PREDICTED: transcription factor bHLH131-like
SwissprotP0CB251e-107BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A078ISV31e-142A0A078ISV3_BRANA; BnaC03g61070D protein
TrEMBLM4D2D51e-146M4D2D5_BRARP; Uncharacterized protein
STRINGBra010635.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.11e-100bHLH family protein